You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
253 lines
8.4 KiB
253 lines
8.4 KiB
irods installation on centos7:
|
|
|
|
# rpm --import https://packages.irods.org/irods-signing-key.asc
|
|
# wget -qO - https://packages.irods.org/renci-irods.yum.repo | sudo tee /etc/yum.repos.d/renci-irods.yum.repo
|
|
|
|
# yum install irods-server irods-database-plugin-postgres
|
|
|
|
|
|
# yum install postgresql-server
|
|
|
|
# postgresql-setup initdb
|
|
Initializing database ... OK
|
|
|
|
# systemctl start postgresql
|
|
|
|
# su - postgres
|
|
Last login: Fri Oct 26 11:30:44 CEST 2018 on pts/0
|
|
|
|
$ psql
|
|
psql (9.2.24)
|
|
Type "help" for help.
|
|
|
|
postgres=# CREATE USER irods WITH PASSWORD 'ir0ds';
|
|
CREATE ROLE
|
|
postgres=# CREATE DATABASE "ICAT";
|
|
CREATE DATABASE
|
|
postgres=# GRANT ALL PRIVILEGES ON DATABASE "ICAT" TO irods;
|
|
GRANT
|
|
postgres=# \l
|
|
List of databases
|
|
Name | Owner | Encoding | Collate | Ctype | Access privileges
|
|
-----------+----------+----------+-------------+-------------+-----------------------
|
|
ICAT | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =Tc/postgres +
|
|
| | | | | postgres=CTc/postgres+
|
|
| | | | | irods=CTc/postgres
|
|
postgres | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 |
|
|
template0 | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =c/postgres +
|
|
| | | | | postgres=CTc/postgres
|
|
template1 | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =c/postgres +
|
|
| | | | | postgres=CTc/postgres
|
|
(4 rows)
|
|
|
|
|
|
# python /var/lib/irods/scripts/setup_irods.py
|
|
The iRODS service account name needs to be defined.
|
|
iRODS user [irods]:
|
|
iRODS group [irods]:
|
|
|
|
+--------------------------------+
|
|
| Setting up the service account |
|
|
+--------------------------------+
|
|
|
|
Existing Group Detected: irods
|
|
Existing Account Detected: irods
|
|
Setting owner of /var/lib/irods to irods:irods
|
|
Setting owner of /etc/irods to irods:irods
|
|
iRODS server's role:
|
|
1. provider
|
|
2. consumer
|
|
Please select a number or choose 0 to enter a new value [1]:
|
|
Updating /etc/irods/server_config.json...
|
|
|
|
+-----------------------------------------+
|
|
| Configuring the database communications |
|
|
+-----------------------------------------+
|
|
|
|
You are configuring an iRODS database plugin. The iRODS server cannot be started until its database has been properly configured.
|
|
|
|
ODBC driver for postgres [PostgreSQL]:
|
|
Database server's hostname or IP address [localhost]:
|
|
Database server's port [5432]:
|
|
Database name [ICAT]:
|
|
Database username [irods]:
|
|
|
|
-------------------------------------------
|
|
Database Type: postgres
|
|
ODBC Driver: PostgreSQL
|
|
Database Host: localhost
|
|
Database Port: 5432
|
|
Database Name: ICAT
|
|
Database User: irods
|
|
-------------------------------------------
|
|
|
|
Please confirm [yes]:
|
|
Database password:
|
|
Updating /etc/irods/server_config.json...
|
|
Error encountered running setup_irods:
|
|
Traceback (most recent call last):
|
|
File "/var/lib/irods/scripts/setup_irods.py", line 437, in main
|
|
setup_server(irods_config, json_configuration_file=options.json_configuration_file)
|
|
File "/var/lib/irods/scripts/setup_irods.py", line 116, in setup_server
|
|
database_interface.setup_database_config(irods_config)
|
|
File "/var/lib/irods/scripts/irods/database_interface.py", line 176, in setup_database_config
|
|
if database_already_in_use_by_irods(irods_config):
|
|
File "/var/lib/irods/scripts/irods/database_interface.py", line 73, in database_already_in_use_by_irods
|
|
with contextlib.closing(database_connect.get_database_connection(irods_config)) as connection:
|
|
File "/var/lib/irods/scripts/irods/database_connect.py", line 218, in get_database_connection
|
|
sys.exc_info()[2])
|
|
File "/var/lib/irods/scripts/irods/database_connect.py", line 201, in get_database_connection
|
|
return pypyodbc.connect(connection_string.encode('ascii'), ansi=True)
|
|
File "/var/lib/irods/scripts/irods/pypyodbc.py", line 2452, in __init__
|
|
self.connect(connectString, autocommit, ansi, timeout, unicode_results, readonly)
|
|
File "/var/lib/irods/scripts/irods/pypyodbc.py", line 2501, in connect
|
|
check_success(self, ret)
|
|
File "/var/lib/irods/scripts/irods/pypyodbc.py", line 988, in check_success
|
|
ctrl_err(SQL_HANDLE_DBC, ODBC_obj.dbc_h, ret, ODBC_obj.ansi)
|
|
File "/var/lib/irods/scripts/irods/pypyodbc.py", line 966, in ctrl_err
|
|
raise DatabaseError(state,err_text)
|
|
IrodsError: pypyodbc encountered an error connecting to the database:
|
|
('28000', '[28000] [unixODBC]FATAL: Ident authentication failed for user "irods"')
|
|
Exiting...
|
|
|
|
# vi /var/lib/pgsql/data/pg_hba.conf:
|
|
|
|
host all all 127.0.0.1/32 md5
|
|
|
|
# systemctl restart postgresql
|
|
|
|
# python /var/lib/irods/scripts/setup_irods.py
|
|
The iRODS service account name needs to be defined.
|
|
iRODS user [irods]:
|
|
iRODS group [irods]:
|
|
|
|
+--------------------------------+
|
|
| Setting up the service account |
|
|
+--------------------------------+
|
|
|
|
Existing Group Detected: irods
|
|
Existing Account Detected: irods
|
|
Setting owner of /var/lib/irods to irods:irods
|
|
Setting owner of /etc/irods to irods:irods
|
|
iRODS server's role:
|
|
1. provider
|
|
2. consumer
|
|
Please select a number or choose 0 to enter a new value [1]:
|
|
Updating /etc/irods/server_config.json...
|
|
|
|
+-----------------------------------------+
|
|
| Configuring the database communications |
|
|
+-----------------------------------------+
|
|
|
|
You are configuring an iRODS database plugin. The iRODS server cannot be started until its database has been properly configured.
|
|
|
|
ODBC driver for postgres [PostgreSQL]:
|
|
Database server's hostname or IP address [localhost]:
|
|
Database server's port [5432]:
|
|
Database name [ICAT]:
|
|
Database username [irods]:
|
|
|
|
-------------------------------------------
|
|
Database Type: postgres
|
|
ODBC Driver: PostgreSQL
|
|
Database Host: localhost
|
|
Database Port: 5432
|
|
Database Name: ICAT
|
|
Database User: irods
|
|
-------------------------------------------
|
|
|
|
Please confirm [yes]:
|
|
Database password:
|
|
Updating /etc/irods/server_config.json...
|
|
Listing database tables...
|
|
Salt for passwords stored in the database:
|
|
Updating /etc/irods/server_config.json...
|
|
|
|
+--------------------------------+
|
|
| Configuring the server options |
|
|
+--------------------------------+
|
|
|
|
iRODS server's zone name [tempZone]: testZone
|
|
iRODS server's port [1247]:
|
|
iRODS port range (begin) [20000]:
|
|
iRODS port range (end) [20199]:
|
|
Control Plane port [1248]:
|
|
Schema Validation Base URI (or off) [file:///var/lib/irods/configuration_schemas]:
|
|
iRODS server's administrator username [rods]: irods
|
|
|
|
-------------------------------------------
|
|
Zone name: testZone
|
|
iRODS server port: 1247
|
|
iRODS port range (begin): 20000
|
|
iRODS port range (end): 20199
|
|
Control plane port: 1248
|
|
Schema validation base URI: file:///var/lib/irods/configuration_schemas
|
|
iRODS server administrator: irods
|
|
-------------------------------------------
|
|
|
|
Please confirm [yes]: yes
|
|
iRODS server's zone key:
|
|
Zone key must be at least 1 character in length.
|
|
iRODS server's zone key:
|
|
iRODS server's negotiation key (32 characters):
|
|
Negotiation key must be exactly 32 characters in length.
|
|
iRODS server's negotiation key (32 characters):
|
|
Control Plane key (32 characters):
|
|
Updating /etc/irods/server_config.json...
|
|
|
|
+-----------------------------------+
|
|
| Setting up the client environment |
|
|
+-----------------------------------+
|
|
|
|
|
|
iRODS server's administrator password:
|
|
|
|
Updating /var/lib/irods/.irods/irods_environment.json...
|
|
|
|
+--------------------------+
|
|
| Setting up default vault |
|
|
+--------------------------+
|
|
|
|
iRODS Vault directory [/var/lib/irods/Vault]:
|
|
|
|
+-------------------------+
|
|
| Setting up the database |
|
|
+-------------------------+
|
|
|
|
Listing database tables...
|
|
Creating database tables...
|
|
|
|
+-------------------+
|
|
| Starting iRODS... |
|
|
+-------------------+
|
|
|
|
Validating [/var/lib/irods/.irods/irods_environment.json]... Success
|
|
Validating [/var/lib/irods/VERSION.json]... Success
|
|
Validating [/etc/irods/server_config.json]... Success
|
|
Validating [/etc/irods/host_access_control_config.json]... Success
|
|
Validating [/etc/irods/hosts_config.json]... Success
|
|
Ensuring catalog schema is up-to-date...
|
|
Updating to schema version 2...
|
|
Updating to schema version 3...
|
|
Updating to schema version 4...
|
|
Updating to schema version 5...
|
|
Catalog schema is up-to-date.
|
|
Starting iRODS server...
|
|
Success
|
|
|
|
+---------------------+
|
|
| Attempting test put |
|
|
+---------------------+
|
|
|
|
Putting the test file into iRODS...
|
|
Getting the test file from iRODS...
|
|
Removing the test file from iRODS...
|
|
Success.
|
|
|
|
+--------------------------------+
|
|
| iRODS is installed and running |
|
|
+--------------------------------+
|
|
|
|
|
|
|
|
|