jeremias 1 year ago
parent
commit
3599c030b4
  1. 11
      kalman/graphics/figure2.py
  2. 33
      kalman/input_files/aorta_C.yaml

11
kalman/graphics/figure2.py

@ -56,15 +56,20 @@ def plot_parameters(dat, input_file, deparameterize=False, ref=None): @@ -56,15 +56,20 @@ def plot_parameters(dat, input_file, deparameterize=False, ref=None):
current_val = []
labels = []
for bnd_c in inputfile['estimation']['boundary_conditions']:
if 'windkessel' in bnd_c['type']:
for bnd_set in inputfile['boundary_conditions']:
if bnd_c['id'] == bnd_set['id']:
current_val.append(bnd_set['value'][0])
labels.append('R_' + str(bnd_c['id']))
elif 'dirichlet' in bnd_c['type']:
current_val.append(inputfile['boundary_conditions'][1]['parameters']['U'])
labels.append('U')
current_val.append(inputfile['boundary_conditions'][1]['parameters']['U'])
dim = dat['theta'].shape[-1]
fig1, axes = plt.subplots(1,1,figsize=(8,6))
@ -79,8 +84,8 @@ def plot_parameters(dat, input_file, deparameterize=False, ref=None): @@ -79,8 +84,8 @@ def plot_parameters(dat, input_file, deparameterize=False, ref=None):
col = cycle(['C0', 'C1', 'C2', 'C3','C4'])
ls = cycle(['-', '-', '--', '--', ':', ':', '-.', '-.'])
legends = cycle(['$R_3$','$R_4$','$R_5$','$R_6$','$U$'])
#legends = cycle(['$R_3$','$U$'])
#legends = cycle(['$R_3$','$R_4$','$R_5$','$R_6$','$U$'])
legends = cycle(labels)
col_ = next(col)

33
kalman/input_files/aorta_C.yaml

@ -6,7 +6,7 @@ fluid: @@ -6,7 +6,7 @@ fluid:
dynamic_viscosity: 0.035
io:
write_path: 'results/aorta_C'
write_path: 'results/aorta'
restart:
path: '' # './projects/nse_coa3d/results/test_restart2/'
time: 0
@ -33,36 +33,36 @@ boundary_conditions: @@ -33,36 +33,36 @@ boundary_conditions:
- U*sin(DOLFIN_PI*(t-4*Tc)/Th)*(t>4*Tc)*(t<= 4*Tc + Th)
+ (t<=5*Tc)*(t>4*Tc+Th)*(-3.67949466208*U*sin(9*DOLFIN_PI*(t-4*Tc)/Th)*exp(-(t-4*Tc)*10)) ']
parameters:
U: 100 #100 safe
U: 100 #100
Th: 0.35
Tc: 0.8
t: 0
-
id: 3
type: 'windkessel'
#value: [10,0,0]
value: [10,0.0008,2400]
#value: [10,0,2400]
p0: [80,1333.223874]
#p0: [0,1333.223874]
-
id: 4
type: 'windkessel'
value: [60,0.00034,4200]
#value: [60,0,4200] #safe
value: [60,0,0]
#value: [60,0.00034,4200]
p0: [80,1333.223874]
#p0: [0,1333.223874]
-
id: 5
type: 'windkessel'
value: [220,0.00034,11000]
#value: [220,0,11000] #safe
value: [220,0,0]
#value: [220,0.00034,11000]
p0: [80,1333.223874]
#p0: [0,1333.223874]
-
id: 6
type: 'windkessel'
value: [160,0.00034,7800]
#value: [160,0,7800] #safe
value: [160,0,0]
#value: [160,0.00034,7800]
p0: [80,1333.223874]
#p0: [0,1333.223874]
@ -144,20 +144,21 @@ estimation: @@ -144,20 +144,21 @@ estimation:
# id: 6
# type: 'windkessel'
# initial_stddev: 1
-
id: 2
type: 'dirichlet'
parameters: 'U'
initial_stddev: 1
#-
# id: 2
# type: 'dirichlet'
# parameters: 'U'
# initial_stddev: 1
measurements:
-
mesh: './meshes/coaortaH3_leo2.0.h5'
#mesh: './meshes/coaortaH1.h5'
fe_degree: 1
#xdmf_file: 'measurements/aorta_C/Perturbation/Ks12V50/u_all.xdmf'
#file_root: 'measurements/aorta_C/Perturbation/Ks12V50/u{i}.h5'
xdmf_file: 'measurements/aorta_C_s100/u_all.xdmf'
file_root: 'measurements/aorta_C_s100/u{i}.h5'
xdmf_file: 'measurements/aorta_s100/u_all.xdmf'
file_root: 'measurements/aorta_s100/u{i}.h5'
indices: 0 # indices of checkpoints to be processed. 0 == all
velocity_direction: ~
noise_stddev: 15 # standard deviation of Gaussian noise

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