This is my full PhD thesis in R Markdown (using the bookdown package), containing a PDF and EPUB file, and a website in the ‘docs’ folder with the integral content of the book. https://git.io/PhDthesisAMR
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 \usepackage{booktabs} \usepackage{amsthm} \makeatletter \def\thm@space@setup{%  \thm@preskip=8pt plus 2pt minus 4pt  \thm@postskip=\thm@preskip } \makeatother