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78 lines
4.0 KiB
78 lines
4.0 KiB
# ==================================================================== # |
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# TITLE # |
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# Antimicrobial Resistance (AMR) Data Analysis for R # |
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# # |
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# SOURCE # |
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# https://github.com/msberends/AMR # |
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# # |
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# LICENCE # |
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# (c) 2018-2021 Berends MS, Luz CF et al. # |
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# Developed at the University of Groningen, the Netherlands, in # |
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# collaboration with non-profit organisations Certe Medical # |
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# Diagnostics & Advice, and University Medical Center Groningen. # |
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# # |
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# This R package is free software; you can freely use and distribute # |
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# it for both personal and commercial purposes under the terms of the # |
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# GNU General Public License version 2.0 (GNU GPL-2), as published by # |
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# the Free Software Foundation. # |
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# We created this package for both routine data analysis and academic # |
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# research and it was publicly released in the hope that it will be # |
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. # |
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# # |
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# Visit our website for the full manual and a complete tutorial about # |
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# how to conduct AMR data analysis: https://msberends.github.io/AMR/ # |
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# ==================================================================== # |
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######################################################################## |
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# `git_development.sh` takes 3 parameters: # |
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# 1. Commit message (character) [mandatory] # |
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# 2. Lazy website generation (logical), with TRUE only changed # |
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# files will be processed [defaults to TRUE] # |
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# 3. Version number to be used in DESCRIPTION and NEWS.md # |
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# [defaults to current tag and last commit number + 9000] # |
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# # |
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# To push new commits to the development branch, run: # |
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# bash git_development.sh "commit message" # |
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# This creates auto version numbering in DESCRIPTION and NEWS.md. # |
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# # |
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# After successful test checks, merge it to the main branch with: # |
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# bash git_merge.sh # |
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# # |
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# To prerelease a new version number, run: # |
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# bash git_development.sh "v1.x.x" FALSE "1.x.x" # |
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# # |
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# To only update the website, run: # |
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# bash git_siteonly.sh # |
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# (which is short for 'bash git_development.sh "website update" FALSE')# |
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######################################################################## |
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# stash current changes |
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# git stash --quiet |
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# go to main |
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git checkout main --quiet |
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echo "• changed branch to main" |
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# import everything from development |
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git merge development --quiet |
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# and send it to git |
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git push --quiet |
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echo "• pushed changes to main" |
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# return to development |
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git checkout development --quiet |
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echo "• changed branch back to development" |
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git status --short |
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echo |
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read -p "Use R-hub to simulate all CRAN checks (y/N)? " choice |
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case "$choice" in |
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y|Y|j|J ) ;; |
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* ) exit 1;; |
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esac |
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Rscript -e "rhub::check(devtools::build(), platform = rhub::platforms()[!is.na(rhub::platforms()$`cran-name`), 'name'])" |
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echo |
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# and get stashed changes back |
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# git stash apply --quiet |
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