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342 lines
7.3 KiB
342 lines
7.3 KiB
# Generated by roxygen2: do not edit by hand |
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S3method("!",mic) |
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S3method("!=",ab_selector) |
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S3method("!=",mic) |
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S3method("%%",mic) |
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S3method("%/%",mic) |
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S3method("&",ab_selector) |
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S3method("&",mic) |
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S3method("*",mic) |
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S3method("+",mic) |
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S3method("-",mic) |
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S3method("/",mic) |
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S3method("<",mic) |
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S3method("<=",mic) |
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S3method("==",ab_selector) |
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S3method("==",mic) |
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S3method(">",mic) |
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S3method(">=",mic) |
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S3method("[",ab) |
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S3method("[",disk) |
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S3method("[",mic) |
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S3method("[",mo) |
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S3method("[<-",ab) |
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S3method("[<-",disk) |
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S3method("[<-",mic) |
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S3method("[<-",mo) |
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S3method("[<-",rsi) |
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S3method("[[",ab) |
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S3method("[[",disk) |
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S3method("[[",mic) |
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S3method("[[",mo) |
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S3method("[[<-",ab) |
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S3method("[[<-",disk) |
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S3method("[[<-",mic) |
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S3method("[[<-",mo) |
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S3method("[[<-",rsi) |
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S3method("^",mic) |
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S3method("|",ab_selector) |
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S3method("|",mic) |
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S3method(abs,mic) |
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S3method(acos,mic) |
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S3method(acosh,mic) |
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S3method(all,ab_selector) |
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S3method(all,ab_selector_any_all) |
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S3method(all,mic) |
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S3method(any,ab_selector) |
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S3method(any,ab_selector_any_all) |
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S3method(any,mic) |
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S3method(as.data.frame,ab) |
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S3method(as.data.frame,mo) |
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S3method(as.double,mic) |
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S3method(as.integer,mic) |
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S3method(as.list,custom_eucast_rules) |
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S3method(as.list,custom_mdro_guideline) |
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S3method(as.matrix,mic) |
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S3method(as.numeric,mic) |
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S3method(as.rsi,data.frame) |
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S3method(as.rsi,default) |
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S3method(as.rsi,disk) |
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S3method(as.rsi,mic) |
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S3method(asin,mic) |
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S3method(asinh,mic) |
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S3method(atan,mic) |
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S3method(atanh,mic) |
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S3method(barplot,disk) |
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S3method(barplot,mic) |
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S3method(barplot,rsi) |
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S3method(c,ab) |
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S3method(c,ab_selector) |
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S3method(c,custom_eucast_rules) |
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S3method(c,custom_mdro_guideline) |
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S3method(c,disk) |
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S3method(c,mic) |
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S3method(c,mo) |
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S3method(c,rsi) |
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S3method(ceiling,mic) |
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S3method(cos,mic) |
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S3method(cosh,mic) |
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S3method(cospi,mic) |
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S3method(cummax,mic) |
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S3method(cummin,mic) |
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S3method(cumprod,mic) |
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S3method(cumsum,mic) |
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S3method(digamma,mic) |
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S3method(droplevels,mic) |
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S3method(droplevels,rsi) |
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S3method(exp,mic) |
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S3method(expm1,mic) |
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S3method(floor,mic) |
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S3method(format,bug_drug_combinations) |
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S3method(gamma,mic) |
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S3method(hist,mic) |
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S3method(kurtosis,data.frame) |
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S3method(kurtosis,default) |
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S3method(kurtosis,matrix) |
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S3method(lgamma,mic) |
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S3method(log,mic) |
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S3method(log10,mic) |
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S3method(log1p,mic) |
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S3method(log2,mic) |
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S3method(max,mic) |
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S3method(mean,mic) |
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S3method(median,mic) |
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S3method(min,mic) |
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S3method(plot,disk) |
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S3method(plot,mic) |
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S3method(plot,resistance_predict) |
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S3method(plot,rsi) |
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S3method(print,ab) |
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S3method(print,bug_drug_combinations) |
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S3method(print,catalogue_of_life_version) |
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S3method(print,custom_eucast_rules) |
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S3method(print,custom_mdro_guideline) |
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S3method(print,disk) |
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S3method(print,mic) |
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S3method(print,mo) |
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S3method(print,mo_renamed) |
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S3method(print,mo_uncertainties) |
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S3method(print,pca) |
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S3method(print,rsi) |
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S3method(prod,mic) |
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S3method(quantile,mic) |
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S3method(range,mic) |
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S3method(rep,ab) |
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S3method(rep,disk) |
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S3method(rep,mic) |
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S3method(rep,mo) |
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S3method(rep,rsi) |
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S3method(round,mic) |
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S3method(sign,mic) |
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S3method(signif,mic) |
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S3method(sin,mic) |
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S3method(sinh,mic) |
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S3method(sinpi,mic) |
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S3method(skewness,data.frame) |
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S3method(skewness,default) |
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S3method(skewness,matrix) |
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S3method(sort,mic) |
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S3method(sqrt,mic) |
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S3method(sum,mic) |
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S3method(summary,mic) |
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S3method(summary,mo) |
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S3method(summary,pca) |
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S3method(summary,rsi) |
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S3method(tan,mic) |
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S3method(tanh,mic) |
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S3method(tanpi,mic) |
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S3method(trigamma,mic) |
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S3method(trunc,mic) |
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S3method(unique,ab) |
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S3method(unique,disk) |
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S3method(unique,mic) |
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S3method(unique,mo) |
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S3method(unique,rsi) |
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export("%like%") |
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export("%like_case%") |
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export("%unlike%") |
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export("%unlike_case%") |
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export(ab_atc) |
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export(ab_atc_group1) |
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export(ab_atc_group2) |
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export(ab_cid) |
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export(ab_class) |
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export(ab_ddd) |
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export(ab_ddd_units) |
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export(ab_from_text) |
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export(ab_group) |
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export(ab_info) |
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export(ab_loinc) |
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export(ab_name) |
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export(ab_property) |
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export(ab_selector) |
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export(ab_synonyms) |
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export(ab_tradenames) |
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export(ab_url) |
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export(administrable_iv) |
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export(administrable_per_os) |
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export(age) |
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export(age_groups) |
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export(all_antimicrobials) |
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export(aminoglycosides) |
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export(aminopenicillins) |
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export(anti_join_microorganisms) |
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export(antifungals) |
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export(antimicrobials_equal) |
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export(antimycobacterials) |
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export(as.ab) |
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export(as.disk) |
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export(as.mic) |
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export(as.mo) |
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export(as.rsi) |
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export(atc_online_ddd) |
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export(atc_online_ddd_units) |
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export(atc_online_groups) |
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export(atc_online_property) |
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export(availability) |
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export(betalactams) |
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export(brmo) |
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export(bug_drug_combinations) |
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export(carbapenems) |
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export(catalogue_of_life_version) |
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export(cephalosporins) |
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export(cephalosporins_1st) |
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export(cephalosporins_2nd) |
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export(cephalosporins_3rd) |
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export(cephalosporins_4th) |
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export(cephalosporins_5th) |
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export(count_I) |
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export(count_IR) |
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export(count_R) |
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export(count_S) |
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export(count_SI) |
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export(count_all) |
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export(count_df) |
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export(count_resistant) |
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export(count_susceptible) |
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export(custom_eucast_rules) |
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export(custom_mdro_guideline) |
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export(eucast_dosage) |
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export(eucast_exceptional_phenotypes) |
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export(eucast_rules) |
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export(facet_rsi) |
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export(filter_first_isolate) |
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export(first_isolate) |
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export(fluoroquinolones) |
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export(full_join_microorganisms) |
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export(g.test) |
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export(geom_rsi) |
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export(get_episode) |
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export(get_locale) |
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export(get_mo_source) |
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export(ggplot_pca) |
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export(ggplot_rsi) |
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export(ggplot_rsi_predict) |
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export(glycopeptides) |
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export(guess_ab_col) |
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export(inner_join_microorganisms) |
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export(is.ab) |
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export(is.disk) |
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export(is.mic) |
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export(is.mo) |
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export(is.rsi) |
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export(is.rsi.eligible) |
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export(is_new_episode) |
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export(italicise_taxonomy) |
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export(italicize_taxonomy) |
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export(key_antimicrobials) |
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export(kurtosis) |
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export(labels_rsi_count) |
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export(left_join_microorganisms) |
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export(like) |
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export(lincosamides) |
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export(lipoglycopeptides) |
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export(macrolides) |
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export(mdr_cmi2012) |
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export(mdr_tb) |
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export(mdro) |
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export(mo_authors) |
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export(mo_class) |
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export(mo_domain) |
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export(mo_failures) |
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export(mo_family) |
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export(mo_fullname) |
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export(mo_genus) |
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export(mo_gramstain) |
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export(mo_info) |
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export(mo_is_gram_negative) |
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export(mo_is_gram_positive) |
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export(mo_is_intrinsic_resistant) |
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export(mo_is_yeast) |
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export(mo_kingdom) |
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export(mo_matching_score) |
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export(mo_name) |
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export(mo_order) |
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export(mo_phylum) |
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export(mo_property) |
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export(mo_rank) |
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export(mo_ref) |
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export(mo_renamed) |
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export(mo_shortname) |
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export(mo_snomed) |
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export(mo_species) |
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export(mo_subspecies) |
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export(mo_synonyms) |
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export(mo_taxonomy) |
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export(mo_type) |
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export(mo_uncertainties) |
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export(mo_url) |
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export(mo_year) |
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export(mrgn) |
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export(n_rsi) |
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export(oxazolidinones) |
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export(pca) |
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export(penicillins) |
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export(polymyxins) |
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export(proportion_I) |
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export(proportion_IR) |
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export(proportion_R) |
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export(proportion_S) |
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export(proportion_SI) |
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export(proportion_df) |
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export(quinolones) |
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export(random_disk) |
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export(random_mic) |
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export(random_rsi) |
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export(resistance) |
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export(resistance_predict) |
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export(right_join_microorganisms) |
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export(rsi_df) |
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export(rsi_predict) |
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export(scale_rsi_colours) |
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export(scale_y_percent) |
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export(semi_join_microorganisms) |
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export(set_ab_names) |
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export(set_mo_source) |
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export(skewness) |
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export(streptogramins) |
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export(susceptibility) |
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export(tetracyclines) |
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export(theme_rsi) |
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export(trimethoprims) |
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export(ureidopenicillins) |
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importFrom(graphics,arrows) |
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importFrom(graphics,axis) |
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importFrom(graphics,barplot) |
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importFrom(graphics,hist) |
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importFrom(graphics,legend) |
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importFrom(graphics,mtext) |
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importFrom(graphics,plot) |
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importFrom(graphics,points) |
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importFrom(graphics,text) |
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importFrom(stats,complete.cases) |
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importFrom(stats,glm) |
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importFrom(stats,lm) |
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importFrom(stats,median) |
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importFrom(stats,pchisq) |
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importFrom(stats,prcomp) |
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importFrom(stats,predict) |
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importFrom(stats,qchisq) |
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importFrom(stats,quantile) |
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importFrom(stats,var)
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