mirror of https://github.com/msberends/AMR
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70 lines
3.1 KiB
70 lines
3.1 KiB
# ==================================================================== # |
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# TITLE # |
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# Antimicrobial Resistance (AMR) Data Analysis for R # |
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# # |
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# SOURCE # |
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# https://github.com/msberends/AMR # |
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# # |
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# LICENCE # |
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# (c) 2018-2021 Berends MS, Luz CF et al. # |
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# Developed at the University of Groningen, the Netherlands, in # |
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# collaboration with non-profit organisations Certe Medical # |
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# Diagnostics & Advice, and University Medical Center Groningen. # |
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# # |
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# This R package is free software; you can freely use and distribute # |
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# it for both personal and commercial purposes under the terms of the # |
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# GNU General Public License version 2.0 (GNU GPL-2), as published by # |
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# the Free Software Foundation. |
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# We created this package for both routine data analysis and academic # |
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# research and it was publicly released in the hope that it will be # |
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# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. # |
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# # |
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# Visit our website for the full manual and a complete tutorial about # |
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# how to conduct AMR data analysis: https://msberends.github.io/AMR/ # |
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# ==================================================================== # |
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on: |
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push: |
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branches: |
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- development |
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- main |
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pull_request: |
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branches: |
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- main |
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name: lintr |
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jobs: |
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lintr: |
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runs-on: macOS-latest |
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env: |
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} |
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steps: |
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- uses: actions/checkout@v2 |
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- uses: r-lib/actions/setup-r@v1 |
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- name: Query dependencies |
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run: | |
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install.packages('remotes') |
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) |
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writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") |
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shell: Rscript {0} |
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- name: Cache R packages |
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uses: actions/cache@v2 |
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with: |
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path: ${{ env.R_LIBS_USER }} |
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key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} |
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restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- |
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- name: Install dependencies |
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run: | |
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install.packages(c("remotes")) |
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remotes::install_deps(dependencies = TRUE) |
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remotes::install_cran("lintr") |
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shell: Rscript {0} |
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- name: Lint |
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run: lintr::lint_package(linters = lintr::with_defaults(line_length_linter = NULL, trailing_whitespace_linter = NULL, object_name_linter = NULL, cyclocomp_linter = NULL, object_length_linter = lintr::object_length_linter(length = 50L)), exclusions = list("R/aa_helper_pm_functions.R")) |
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shell: Rscript {0}
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