(v1.7.1.9029) unit test fix

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: AMR
-Version: 1.7.1.9028
-Date: 2021-08-20
+Version: 1.7.1.9029
+Date: 2021-08-21
 Title: Antimicrobial Resistance Data Analysis
 Description: Functions to simplify and standardise antimicrobial resistance (AMR)
     data analysis and to work with microbial and antimicrobial properties by

NEWS.md

@@ -1,5 +1,5 @@
-# `AMR` 1.7.1.9028
-## <small>Last updated: 20 August 2021</small>
+# `AMR` 1.7.1.9029
+## <small>Last updated: 21 August 2021</small>
 
 ### Breaking changes
 * Removed `p_symbol()` and all `filter_*()` functions (except for `filter_first_isolate()`), which were all deprecated in a previous package version

data-raw/_install_deps.R

@@ -39,7 +39,11 @@ if (length(to_install) == 0) {
 }
 for (i in seq_len(length(to_install))) {
   cat("Installing package", to_install[i], "\n")
-  tryCatch(install.packages(to_install[i], repos = "https://cran.rstudio.com/", dependencies = c("Depends", "Imports"), quiet = FALSE),
+  tryCatch(install.packages(to_install[i],
+                            type = ifelse(.Platform$OS.type == "unix", "source", "binary"),
+                            repos = "https://cran.rstudio.com/",
+                            dependencies = c("Depends", "Imports"),
+                            quiet = FALSE),
            # message = function(m) invisible(),
            warning = function(w) message(w$message),
            error = function(e) message(e$message))
@@ -51,9 +55,10 @@ if (length(to_update) == 0) {
   message("\nNothing to update\n")
 }
 for (i in seq_len(length(to_update))) {
-  cat("Updating package", to_update[i], "\n")
+  cat("Updating package '", to_update[i], "' v", as.character(packageVersion(to_update[i])), "\n", sep = "")
   tryCatch(update.packages(to_update[i], repos = "https://cran.rstudio.com/", ask = FALSE),
            # message = function(m) invisible(),
            warning = function(w) message(w$message),
            error = function(e) message(e$message))
+  cat("Updated to '", to_update[i], "' v", as.character(packageVersion(to_update[i])), "\n", sep = "")
 }

docs/articles/datasets.html

@@ -44,7 +44,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">AMR (for R)</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9028</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9029</span>
       </span>
     </div>
 
@@ -190,7 +190,7 @@
     <div class="page-header toc-ignore">
       <h1 data-toc-skip>Data sets for download / own use</h1>
             
-            <h4 data-toc-skip class="date">20 August 2021</h4>
+            <h4 data-toc-skip class="date">21 August 2021</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/master/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
       <div class="hidden name"><code>datasets.Rmd</code></div>

docs/news/index.html

@@ -92,7 +92,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">AMR (for R)</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9028</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9029</span>
       </span>
     </div>
 
@@ -240,12 +240,12 @@
       <small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
     </div>
 
-    <div id="amr-1719028" class="section level1">
-<h1 class="page-header" data-toc-text="1.7.1.9028">
-<a href="#amr-1719028" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9028</h1>
-<div id="last-updated-20-august-2021" class="section level2">
+    <div id="amr-1719029" class="section level1">
+<h1 class="page-header" data-toc-text="1.7.1.9029">
+<a href="#amr-1719029" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9029</h1>
+<div id="last-updated-21-august-2021" class="section level2">
 <h2 class="hasAnchor">
-<a href="#last-updated-20-august-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 20 August 2021</small>
+<a href="#last-updated-21-august-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 21 August 2021</small>
 </h2>
 <div id="breaking-changes" class="section level3">
 <h3 class="hasAnchor">