Browse Source

(v1.7.1.9036) dplyr grouping fix on windows?

new-mo-algorithm
parent
commit
953dfac9e5
  1. 46
      .github/workflows/check.yaml
  2. 2
      DESCRIPTION
  3. 2
      NEWS.md
  4. BIN
      data-raw/AMR_latest.tar.gz
  5. 2
      docs/articles/datasets.html
  6. 8
      docs/news/index.html
  7. 6
      inst/tinytest/test-first_isolate.R

46
.github/workflows/check.yaml

@ -53,38 +53,34 @@ jobs: @@ -53,38 +53,34 @@ jobs:
matrix:
config:
# these are the developmental version of R - we allow those tests to fail
- {os: macOS-latest, r: 'devel', allowfail: false}
- {os: windows-latest, r: 'devel', allowfail: false}
- {os: ubuntu-20.04, r: 'devel', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# test all systems against all released versions of R >= 3.0, we support them all!
- {os: macOS-latest, r: '4.1', allowfail: false}
# - {os: macOS-latest, r: 'devel', allowfail: false}
# - {os: windows-latest, r: 'devel', allowfail: false}
# - {os: ubuntu-20.04, r: 'devel', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
#
# # test all systems against all released versions of R >= 3.0, we support them all!
# - {os: macOS-latest, r: '4.1', allowfail: false}
- {os: windows-latest, r: '4.1', allowfail: false}
- {os: ubuntu-20.04, r: '4.1', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: macOS-latest, r: '4.0', allowfail: false}
# - {os: ubuntu-20.04, r: '4.1', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# - {os: macOS-latest, r: '4.0', allowfail: false}
- {os: windows-latest, r: '4.0', allowfail: false}
- {os: ubuntu-20.04, r: '4.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: macOS-latest, r: '3.6', allowfail: false}
# - {os: ubuntu-20.04, r: '4.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# - {os: macOS-latest, r: '3.6', allowfail: false}
- {os: windows-latest, r: '3.6', allowfail: false}
- {os: ubuntu-20.04, r: '3.6', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: macOS-latest, r: '3.5', allowfail: false}
# - {os: ubuntu-20.04, r: '3.6', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# - {os: macOS-latest, r: '3.5', allowfail: false}
- {os: windows-latest, r: '3.5', allowfail: false}
- {os: ubuntu-20.04, r: '3.5', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: macOS-latest, r: '3.4', allowfail: false}
# - {os: ubuntu-20.04, r: '3.5', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# - {os: macOS-latest, r: '3.4', allowfail: false}
- {os: windows-latest, r: '3.4', allowfail: false}
- {os: ubuntu-20.04, r: '3.4', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: macOS-latest, r: '3.3', allowfail: false}
# - {os: ubuntu-20.04, r: '3.4', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# - {os: macOS-latest, r: '3.3', allowfail: false}
- {os: windows-latest, r: '3.3', allowfail: false}
- {os: ubuntu-20.04, r: '3.3', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: macOS-latest, r: '3.2', allowfail: false}
# - {os: ubuntu-20.04, r: '3.3', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# - {os: macOS-latest, r: '3.2', allowfail: false}
- {os: windows-latest, r: '3.2', allowfail: false}
- {os: ubuntu-20.04, r: '3.2', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# - {os: macOS-latest, r: '3.1', allowfail: false}
# - {os: windows-latest, r: '3.1', allowfail: false}
- {os: ubuntu-20.04, r: '3.1', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# - {os: macOS-latest, r: '3.0', allowfail: false}
# - {os: windows-latest, r: '3.0', allowfail: false}
- {os: ubuntu-20.04, r: '3.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# - {os: ubuntu-20.04, r: '3.2', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# - {os: ubuntu-20.04, r: '3.1', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# - {os: ubuntu-20.04, r: '3.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true

2
DESCRIPTION

@ -1,5 +1,5 @@ @@ -1,5 +1,5 @@
Package: AMR
Version: 1.7.1.9035
Version: 1.7.1.9036
Date: 2021-08-30
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)

2
NEWS.md

@ -1,4 +1,4 @@ @@ -1,4 +1,4 @@
# `AMR` 1.7.1.9035
# `AMR` 1.7.1.9036
## <small>Last updated: 30 August 2021</small>
### Breaking changes

BIN
data-raw/AMR_latest.tar.gz

Binary file not shown.

2
docs/articles/datasets.html

@ -44,7 +44,7 @@ @@ -44,7 +44,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9035</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9036</span>
</span>
</div>

8
docs/news/index.html

@ -92,7 +92,7 @@ @@ -92,7 +92,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9035</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9036</span>
</span>
</div>
@ -240,9 +240,9 @@ @@ -240,9 +240,9 @@
<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1719035" class="section level1">
<h1 class="page-header" data-toc-text="1.7.1.9035">
<a href="#amr-1719035" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9035</h1>
<div id="amr-1719036" class="section level1">
<h1 class="page-header" data-toc-text="1.7.1.9036">
<a href="#amr-1719036" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9036</h1>
<div id="last-updated-30-august-2021" class="section level2">
<h2 class="hasAnchor">
<a href="#last-updated-30-august-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 30 August 2021</small>

6
inst/tinytest/test-first_isolate.R

@ -117,12 +117,14 @@ if (AMR:::pkg_is_available("dplyr")) { @@ -117,12 +117,14 @@ if (AMR:::pkg_is_available("dplyr")) {
first_isolate(col_date = "date",
col_mo = "mo",
col_patient_id = "patient_id",
info = FALSE),
info = FALSE,
require_cur_data = TRUE),
example_isolates %>%
first_isolate(col_date = "date",
col_mo = "mo",
col_patient_id = "patient_id",
info = FALSE))
info = FALSE,
require_cur_data = TRUE))
# support for WHONET
expect_message(example_isolates %>%

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