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(v1.7.1.9038) dplyr grouping fix on windows?

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  1. 4
      DESCRIPTION
  2. 4
      NEWS.md
  3. 2
      R/first_isolate.R
  4. BIN
      data-raw/AMR_latest.tar.gz
  5. 4
      docs/articles/datasets.html
  6. 12
      docs/news/index.html

4
DESCRIPTION

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Package: AMR
Version: 1.7.1.9037
Date: 2021-08-31
Version: 1.7.1.9038
Date: 2021-09-01
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by

4
NEWS.md

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# `AMR` 1.7.1.9037
## <small>Last updated: 31 August 2021</small>
# `AMR` 1.7.1.9038
## <small>Last updated: 1 September 2021</small>
### Breaking changes
* Removed `p_symbol()` and all `filter_*()` functions (except for `filter_first_isolate()`), which were all deprecated in a previous package version

2
R/first_isolate.R

@ -204,7 +204,7 @@ first_isolate <- function(x = NULL, @@ -204,7 +204,7 @@ first_isolate <- function(x = NULL,
if (is_null_or_grouped_tbl(x)) {
# when `x` is left blank, auto determine it (get_current_data() also contains dplyr::cur_data_all())
# is also fix for using a grouped df as input (a dot as first argument)
x <- tryCatch(get_current_data(arg_name = "x", call = -2, requires_cur_data = list(...)$require_cur_data), error = function(e) x)
x <- tryCatch(get_current_data(arg_name = "x", call = -2), error = function(e) x)
}
meet_criteria(x, allow_class = "data.frame") # also checks dimensions to be >0
meet_criteria(col_date, allow_class = "character", has_length = 1, allow_NULL = TRUE, is_in = colnames(x))

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docs/articles/datasets.html

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</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9037</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9038</span>
</span>
</div>
@ -190,7 +190,7 @@ @@ -190,7 +190,7 @@
<div class="page-header toc-ignore">
<h1 data-toc-skip>Data sets for download / own use</h1>
<h4 data-toc-skip class="date">31 August 2021</h4>
<h4 data-toc-skip class="date">01 September 2021</h4>
<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/master/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
<div class="hidden name"><code>datasets.Rmd</code></div>

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docs/news/index.html

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</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9037</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9038</span>
</span>
</div>
@ -240,12 +240,12 @@ @@ -240,12 +240,12 @@
<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1719037" class="section level1">
<h1 class="page-header" data-toc-text="1.7.1.9037">
<a href="#amr-1719037" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9037</h1>
<div id="last-updated-31-august-2021" class="section level2">
<div id="amr-1719038" class="section level1">
<h1 class="page-header" data-toc-text="1.7.1.9038">
<a href="#amr-1719038" class="anchor" aria-hidden="true"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9038</h1>
<div id="last-updated-1-september-2021" class="section level2">
<h2 class="hasAnchor">
<a href="#last-updated-31-august-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 31 August 2021</small>
<a href="#last-updated-1-september-2021" class="anchor" aria-hidden="true"></a><small>Last updated: 1 September 2021</small>
</h2>
<div id="breaking-changes" class="section level3">
<h3 class="hasAnchor">

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