P281424
/
AMR
mirror of https://github.com/msberends/AMR
1
0
Fork 0
Code Releases Activity

(v1.3.0.9019) small fix

Browse Source
pull/67/head
dr. M.S. (Matthijs) Berends 3 years ago
parent 7b6dd676f7
commit 354c606d6a
13 changed files with 23 additions and 23 deletions
Show Stats Download Patch File Download Diff File

2
DESCRIPTION
Unescape Escape View File

@ -1,5 +1,5 @@
Package: AMR
Version: 1.3.0.9018
Version: 1.3.0.9019
Date: 2020-09-14
Title: Antimicrobial Resistance Analysis
Authors@R: c(

2
NEWS.md
Unescape Escape View File

@ -1,4 +1,4 @@
# AMR 1.3.0.9018
# AMR 1.3.0.9019
## <small>Last updated: 14 September 2020</small>
Note: some changes in this version were suggested by anonymous reviewers from the journal we submitted our manuscipt to. We are those reviewers very grateful for going through our code so thoroughly!

2
R/mo.R
Unescape Escape View File

@ -314,7 +314,7 @@ exec_as.mo <- function(x,
res_df <- haystack[which(eval(substitute(needle), envir = haystack, enclos = parent.frame())), , drop = FALSE]
if (NROW(res_df) > 1) {
# sort the findings on matching score
res_df <- res_df[order(mo_matching_score(x_backup[i], res_df[, "fullname", drop = TRUE]), decreasing = TRUE), , drop = FALSE]
res_df <- res_df[order(mo_matching_score(input, res_df[, "fullname", drop = TRUE]), decreasing = TRUE), , drop = FALSE]
}
res <- as.character(res_df[, column, drop = TRUE])
if (length(res) == 0) {

0
man/figures/logo.svg → data-raw/logo.svg
Unescape Escape View File

Side by Side Swipe Overlay

Before

Width:  |  Height:  |  Size: 222 KiB

After

Width:  |  Height:  |  Size: 222 KiB

4
docs/404.html
Unescape Escape View File

@ -49,7 +49,7 @@
<script src="https://msberends.github.io/AMR/extra.js"></script>
<meta property="og:title" content="Page not found (404)" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.svg" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png" />
@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="https://msberends.github.io/AMR/index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9018</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9019</span>
</span>
</div>

4
docs/LICENSE-text.html
Unescape Escape View File

@ -49,7 +49,7 @@
<script src="extra.js"></script>
<meta property="og:title" content="License" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.svg" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png" />
@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9018</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9019</span>
</span>
</div>

4
docs/articles/index.html
Unescape Escape View File

@ -49,7 +49,7 @@
<script src="../extra.js"></script>
<meta property="og:title" content="Articles" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.svg" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png" />
@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9018</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9019</span>
</span>
</div>

4
docs/authors.html
Unescape Escape View File

@ -49,7 +49,7 @@
<script src="extra.js"></script>
<meta property="og:title" content="Citation and Authors" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.svg" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png" />
@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9018</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9019</span>
</span>
</div>

4
docs/index.html
Unescape Escape View File

@ -24,7 +24,7 @@
using evidence-based methods, like those defined by Leclercq et al. (2013)
&lt;doi:10.1111/j.1469-0691.2011.03703.x&gt; and the Clinical and Laboratory
Standards Institute (2014) &lt;isbn: 1-56238-899-1&gt;.">
<meta property="og:image" content="https://msberends.github.io/AMR/logo.svg">
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png">
<!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
@ -43,7 +43,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9018</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9019</span>
</span>
</div>

10
docs/news/index.html
Unescape Escape View File

@ -49,7 +49,7 @@
<script src="../extra.js"></script>
<meta property="og:title" content="Changelog" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.svg" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png" />
@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9018</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9019</span>
</span>
</div>
@ -236,9 +236,9 @@
<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1309018" class="section level1">
<h1 class="page-header" data-toc-text="1.3.0.9018">
<a href="#amr-1309018" class="anchor"></a>AMR 1.3.0.9018<small> Unreleased </small>
<div id="amr-1309019" class="section level1">
<h1 class="page-header" data-toc-text="1.3.0.9019">
<a href="#amr-1309019" class="anchor"></a>AMR 1.3.0.9019<small> Unreleased </small>
</h1>
<div id="last-updated-14-september-2020" class="section level2">
<h2 class="hasAnchor">

2
docs/pkgdown.yml
Unescape Escape View File

@ -2,7 +2,7 @@ pandoc: 2.7.3
pkgdown: 1.5.1.9000
pkgdown_sha: eae56f08694abebf93cdfc0dd8e9ede06d8c815f
articles: []
last_built: 2020-09-14T10:20Z
last_built: 2020-09-14T11:57Z
urls:
reference: https://msberends.github.io/AMR/reference
article: https://msberends.github.io/AMR/articles

4
docs/reference/index.html
Unescape Escape View File

@ -49,7 +49,7 @@
<script src="../extra.js"></script>
<meta property="og:title" content="Function reference" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.svg" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png" />
@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9018</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9019</span>
</span>
</div>

4
docs/survey.html
Unescape Escape View File

@ -49,7 +49,7 @@
<script src="extra.js"></script>
<meta property="og:title" content="Survey" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.svg" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png" />
@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9018</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9019</span>
</span>
</div>

Write Preview
Loading…
Cancel
Save