Shared code of the system genetics group.
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Hylke C. Donker 35f356dd33 Use BAM files for htseq-count. 1 year ago
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step1_fastqc Made snippet input- and output files more harmonised. 1 year ago
step2_trim Bug fix in trimmomatic paired-end flag. 1 year ago
step3_align Added htseq-count snippet + updated STAR snippet indicating prebuilt genome index. 1 year ago
step4_multiqc Made snippet input- and output files more harmonised. 1 year ago
step5_count Use BAM files for htseq-count. 1 year ago
step6_overall_QC Made snippet input- and output files more harmonised. 1 year ago
umi Added comments to umi deduplication 1 year ago
README.md

README.md