35 Commits (master)
 

Author SHA1 Message Date
Hylke C. Donker 35f356dd33 Use BAM files for htseq-count. 1 year ago
Hylke C. Donker 4b449ded08 Bug fix in trimmomatic paired-end flag. 1 year ago
Hylke C. Donker 1c42a61e48 Updated htseq-count with extra comments. 1 year ago
Hylke C. Donker e852072235 Added htseq-count snippet + updated STAR snippet indicating prebuilt genome index. 1 year ago
T. Karp 4443b3c2a9 Merge pull request 'Comments to umi deduplication script' (#8) from s3970582/system_genetics:master into master 1 year ago
TatiKarp d4016b44b6 Added comments to umi deduplication 1 year ago
T. Karp f58dfdaad6 Merge pull request 'Pulling from system_genetic to my repository' (#1) from GRIAC/system_genetics:master into master 1 year ago
H.C. Donker 55658e204f Merge pull request 'Made snippet input- and output files more harmonised.' (#6) from feature/harmonised-steps into master 1 year ago
Hylke C. Donker f93596dd87 Made snippet input- and output files more harmonised. 1 year ago
M. Berg a2bc313515 Simple snippet on running MultiQC to collate FastQC results 1 year ago
T. Karp 981a983dd5 Merge pull request 'UMI deduplication script from Victor' (#3) from s3970582/system_genetics:master into master 2 years ago
TatiKarp c05d3f7868 Added description and some comments for UMi deduplication 2 years ago
Jos van Nijnatten 59f1b425b1 Merge pull request 'Small snippet that generates a genome index and aligns the RNAseq reads.' (#2) from step3/star-alignment-snippet into master 2 years ago
Jos van Nijnatten 65d7193848 Merge branch 'master' into step3/star-alignment-snippet 2 years ago
Jos van Nijnatten cba83716c8 Merge pull request 'Trimmomatic update (simplified)' (#5) from P300299/system_genetics:master into master 2 years ago
Jos van Nijnatten 6cf40804c4 adapter comments 2 years ago
Jos van Nijnatten 51abdcdb26 Trimmomatic update (simplified) 2 years ago
Jos van Nijnatten e2206cbc39 Merge pull request 'FastQC, Trimming, Overall QC (initial)' (#1) from P300299/system_genetics:master into master 2 years ago
Jos van Nijnatten 4c52527340 Merge branch 'master' into master 2 years ago
Jos van Nijnatten 170a001729 Count reads in X and Y chromosome. 2 years ago
C. Qi 4b61c099f6 Update 'rnaseq/step2_trim/snippet.sh' 2 years ago
Hylke C. Donker 1037d154e3 Small snippet that generates a genome index and aligns the RNAseq reads. 2 years ago
TatiKarp a7651f6a21 UMI deduplication script from Victor 2 years ago
Jos van Nijnatten 648cd09a0e fastqc: simple comment. trimming: reverted back. overall qc: simplified the scripts and made sure to add instructions. 2 years ago
Jos van Nijnatten 135f231c86 Remove whitespace, MacOS specific files. 2 years ago
Jos van Nijnatten 58bd93171c Test change 2 years ago
Jos van Nijnatten 3d7c9e3b1c FastQC, Trimming, Overall QC (initial) 2 years ago
Hylke C. Donker 7ecbc2aee9 Template structure. 2 years ago
Hylke Cornelis Donker 0dcd6ac858 Merge branch 'feature/drone-pipeline' 3 years ago
Hylke Cornelis Donker d28fafef27 Another try of drone 3 years ago
Hylke Cornelis Donker 37bde351e1 Added Drone with R linter. 3 years ago
Hylke Cornelis Donker ae75ad9f9d Merge branch 'master' of https://git.web.rug.nl/GRIAC/system_genetics 3 years ago
Corneel Vermeulen 828476002a This is a test 3 years ago
Corneel Vermeulen 02d446ad5a first commit 3 years ago
Hylke Cornelis Donker 1dcf333571 first commit 3 years ago